Indonesia’s Spice Islands and Raja Ampat Aboard Aqua Blu

Jakarta is a melting pot of cultures and a bustling capital. The city has been important to trade since the 4th century; it was founded as Sunda Kelapa, a significant trading port for the Sunda Kingdom, the Hindu realm that once occupied this area. The Dutch arrived in 1619 to establish the Dutch East Indies, renaming the city Batavia and proclaiming it their capital. Nutmeg, cloves, cinnamon and more were exported from here. During the Japanese occupation of World War II, the Dutch were expelled and the city took its current name, which it retained after independence.

Ambon Island welcomes travelers to the historic "Spice Islands" through its bustling maritime heart at Pelabuhan Yos Soedarso Ambon, a port framed by dramatic green mountains and the deep blue waters of Ambon Bay. This vibrant hub offers a seamless entry into a world of colonial heritage and world-class diving, with the colorful markets and historic sites of Ambon City just moments away from the pier. The port serves as an inviting gateway to the island’s pristine white-sand beaches and the legendary nutmeg groves that once changed the course of global history.

The sea stretched endlessly in all directions, meeting the sky at a distant horizon. Gentle waves rolled beneath the vessel, creating a soothing rhythm as it moved across the water. The cool breeze carried the scent of salt, and the sunlight sparkled on the surface like countless diamonds. Seabirds occasionally glided overhead, adding life to the vast blue expanse. Surrounded by open water, the scene felt both peaceful and awe-inspiring.

Spend the next several days discovering Raja Ampat, part of the Coral Triangle and home to one of the planet’s richest marine ecosystems. Arrive in Misool, the second largest island in Raja Ampat. In the Wayil Islands, discover breathtaking karst limestone peaks and hidden lagoons. Set out on kayaks or snorkel and dive in turquoise waters alive with sea fans, blue fusiliers, manta rays and trevallies. On Yillet island—or “pulau” in Indonesian—uncover soft coral reefs teeming with reef sharks, parrotfish, moray eels and colorful nudibranchs. Keep an eye out for cockatoos as you make your way to shore. Cap the day on a secluded beach relaxing or snorkeling close to shore before sunset cocktails.

Misool is one of the four main islands of Raja Ampat, located in West Papua, Indonesia, and is widely regarded as one of the most beautiful and biodiverse marine regions on Earth.

Characterized by dramatic limestone karst formations rising from crystal-clear turquoise waters, Misool offers breathtaking scenery both above and below the surface. Hidden lagoons, secluded beaches, and maze-like clusters of small islets create a surreal and untouched landscape.

The island lies within the Raja Ampat Marine Park, a global hotspot for marine biodiversity. Its waters are home to vibrant coral reefs, thousands of fish species, manta rays, reef sharks, and other extraordinary marine life, making it a world-class destination for diving and snorkeling.

Misool is also culturally significant, with ancient rock art sites found on some of its cliffs, offering a glimpse into early human history in the region.

Remote and carefully protected, Misool remains largely unspoiled, with eco-conscious tourism helping preserve its fragile ecosystems.

Visit Misool’s magnificent One Thousand Temples karst island and lagoon complex, where you’ll see ancient rock art estimated to be about 15,000 years old. Those up for an arduous climb will get the chance to swim in stingless jellyfish lakes. Living without predators, these moon, golden medusa and Cassiopeia jellyfish have developed stingless bodies. Traverse dramatic karst seascapes by Zodiac and delve into Tomolol Cave, a mesmerizing subterranean river system. Beneath the surface, snorkeling and diving reveal a kaleidoscope of marine life, from pygmy seahorses to barracudas and colorful gobies.

Discover Daram, the easternmost island of Misool and the most remote part of the Misool Marine Reserve. It’s known for its exceptional marine life and is home to hawksbill and green turtles that nest on untouched beaches. Discover vast underwater landscapes, encountering lionfish, Christmas tree worms, clownfish and more–a haven for underwater photography enthusiasts.

Step ashore on the uninhabited and privately owned forested island of Sabuda, a sanctuary of natural beauty that rises nearly 150 meters above sea level and is surrounded by a vibrant coral reef. Stroll along one of the island’s charming beaches or hidden coves and snorkel or kayak in tranquil, turquoise waters.

Sebakor bay—or “teluk” in Indonesian—boasts stunning coastlines shaped by karst rock formations and narrow inlets. A mesmerizing network of shallow reefs and waterways, bordered by vast mangroves and rivers that wind deep into the Papuan mainland, make this area ideal for kayaking and Zodiac cruising. The crown jewels of Sebakor, though, are its offshore seamounts boasting vibrant reefs and abundant marine life. You’ll also explore a bat cave nestled in a natural rocky cathedral along the shoreline. Drift through crystal-blue waters on a Zodiac to spot the colony of bats clinging to the walls and ceilings.

Sebakor Bay is a remote and scenic bay located in West Papua, Indonesia, along the Bomberai Peninsula. Surrounded by dense rainforest, limestone formations, and quiet coastal waters, it is part of one of the most untouched and biologically rich regions in the country.

The bay is known for its calm, sheltered waters and striking natural beauty, with green hills descending into turquoise seas. It lies within a broader marine area that supports diverse ecosystems, including coral reefs, mangroves, and abundant marine life.

Wildlife in and around Sebakor Bay includes tropical fish, seabirds, and occasionally larger marine species, making it an appealing spot for nature observation, snorkeling, and exploration by boat.

Due to its isolation and limited development, Sebakor Bay offers a peaceful and authentic experience, بعيد from mass tourism. It is typically visited as part of expedition cruises or specialized trips exploring West Papua’s hidden coastal landscapes.

Arrive at the tropical haven of Momon, located on West Papua’s Bomberai Peninsula. Marvel at Kiti Kiti waterfall which cascades directly into the sea and swim to its plunge pool for an invigorating natural shower. Snorkel or kayak along the jungle-fringed coastline, keeping an eye out for hornbills and forest kangaroos.

Discover Koon, a tiny but beautiful island in the Banda Sea. Here, you’ll snorkel or dive in the underwater realm of “Too Many Fish,” an area known for possible sightings of reef sharks, leopard sharks and hammerheads. Explore Gorong Island’s shallow reefs and dramatic drop-offs, accessed via a narrow waterway—a paradise for marine enthusiasts.

Pulau Gorong is a beautiful island located in the Maluku region of eastern Indonesia. It is the largest island in the Gorong Archipelago and is surrounded by the waters of the Ceram Sea. The island is known for its tropical forests, scenic coastline, and traditional villages. Fishing and agriculture are the main occupations of the local people. Pulau Gorong is also rich in culture and reflects the maritime heritage of the Maluku Islands.

Begin your day with a sunrise breakfast aboard Aqua Blu, set against the dramatic silhouette of Pulau Manuk’s towering cliffs—a volcanic island that rises three kilometers from the ocean floor. Uninhabited by humans, this isle provides a haven for nature’s predators: fish-eating birds dive with precision into its pristine waters, and sea snakes and reef sharks gather at its underwater thermal springs. Be on the lookout for frigatebirds, gannets and other seabirds that nest in Manuk’s verdant treetops. Enjoy swimming or kayaking in the ocean before taking part in a cooking demonstration aboard the ship.

At Pulau Ai, one of the westernmost gems of the Banda Islands, immerse yourself in crystalline waters as you swim, snorkel or dive among coral gardens full of reef fish. Afterward, step ashore for a guided tour of Ai where you’ll learn about the island's storied past and visit its historic nutmeg storehouses, once vital to the lucrative spice trade. Be sure to keep your camera handy as you explore with your National Geographic certified photo instructor by your side.

In the afternoon, journey to the shores of Pulau Run, an idyllic island that was a center for nutmeg trade in the 17th century and was famously traded for Manhattan in 1667 by the British and Dutch. In the evening, enjoy a cocktail party on these historic sands, watching the sun sink gracefully into the sea.

Pulau Rhun, also known as Run Island is a coconut, fringed, picture-perfect island regarded as one of the best in Indonesia. Rhun has a deep history rooted in the spice wars of the 17th century as it played a significant role during the treaty of Breda that ended the second Anglo-Dutch war. During the negotiations, England ceded control of Rhun in exchange for the Island of New Netherland. The exchange complete, the English renamed the small settlement on the Island from New Amsterdam to New York. Join local guides and your expedition team for a walking tour amongst the many historic locations.

Begin your day with an early morning swim in tranquil ocean waters, followed by snorkeling, diving or kayaking excursions. On the northern shores of Nusa Laut, explore the picturesque fishing villages of Ameth and Akon, where time seems to slow amidst the island's serene beauty. With luck, you’ll spot the elusive dugong, the Southeast Asian cousin of the gentle American manatee, in its natural environment.

As your journey continues toward Ambon, take part in a cooking lesson that brings the flavors of the Spice Islands to life. Enhance your day with insightful onboard presentations from your naturalist guides, deepening your connection to the landscapes, cultures and wildlife you’ve encountered along the way.

Disembark in Ambon after breakfast and transfer to the airport to fly to Jakarta on our recommended flight*; transfers to the airport and luggage assistance will be provided. Upon arrival, connect to your flight home.

*If you are not purchasing the recommended group flight, please get in touch to confirm your arrangements.

Ambon Island welcomes travelers to the historic "Spice Islands" through its bustling maritime heart at Pelabuhan Yos Soedarso Ambon, a port framed by dramatic green mountains and the deep blue waters of Ambon Bay. This vibrant hub offers a seamless entry into a world of colonial heritage and world-class diving, with the colorful markets and historic sites of Ambon City just moments away from the pier. The port serves as an inviting gateway to the island’s pristine white-sand beaches and the legendary nutmeg groves that once changed the course of global history.

Jakarta is a melting pot of cultures and a bustling capital. The city has been important to trade since the 4th century; it was founded as Sunda Kelapa, a significant trading port for the Sunda Kingdom, the Hindu realm that once occupied this area. The Dutch arrived in 1619 to establish the Dutch East Indies, renaming the city Batavia and proclaiming it their capital. Nutmeg, cloves, cinnamon and more were exported from here. During the Japanese occupation of World War II, the Dutch were expelled and the city took its current name, which it retained after independence.